Downloads

Download masked FASTA sequences

Download the current version of LCR-eXXXplorer masked by CAST and SEG (both using default settings).

Download GFF3 files

Download the current version of LCR-eXXXplorer in GFF3 format.

Download CSV files

Download the current version of LCR-eXXXplorer in CSV format. For a description of the fields in the CSV refer to the following table.

Column # Header(s) Description(s)
1 load_id UniprotKB Accession
2 gene Gene name
3 Note Protein name
4 Organism Organism name
5 length Protein sequence length
6 perCAST Percentage of protein sequence length masked by CAST
7 perSEG Percentage of protein sequence length masked by SEG
8 - 27 cΧ* Count of residues of type X masked by CAST
28 - 47 sX* Counts of residues of type X masked by SEG
* All of the 20 standard amino-acid types in ascending lexicographical order.

 

The LCRs eXXXplorer development team: Ioannis Kirmitzoglou, and Vasilis J. Promponas
(c) 2006-2014 Bioinformatics Research Laboratory, University of Cyprus
Sponsors