When using BLASTX take care to define the correct genetic code that will be used to translate the query using the -query_gencode option.
Available genetic codes are
- 1 - Standard (default)
- 2 - Vertebrate Mitochondrial
- 3 - Yeast Mitochondrial
- 4 - Mold Mitochondrial
- 5 - Invertebrate Mitochondrial
- 6 - Ciliate Nuclear
- 9 - Echinoderm Mitochondrial
- 10 - Euplotid Nuclear
- 11 - Bacteria & Archaea
- 12 - Alternative Yeast Nuclear
- 13 - Ascidian Mitochondrial
- 14 - Blepharisma Macronuclear